bilby_pipe.process_bilby_mcmc

This executable will process an ongoing bilby_mcmc analyses to produce a combined result. The executable is assumed to be run from the submit directory (e.g., where the .ini file is) and on the submit machine.

Note: if your analysis uses HTCondor file transfer (transfer-files=True), the resume files required for processing will not exist on the submit machine until the job has completed. You will need to use bilby_pipe_htcondor_sync to first sync the files to the submit machine, then run bilby_pipe_process_bilby_mcmc.

Attributes

RESULT_SUBDIR

Classes

Dummy
RobustUnpickler	python's Unpickler extended to interpreter sessions and more types

Functions

glob_and_filter_files(args, globpath)
get_resume_file_paths(args, label)
extract_label_from_filename(filename)
check_unique_file(files, ftype)
find_data_dump_file(args)
find_config(args)
get_output_fname(outdir_result, resume_files[, ...])
update_convergence_inputs(args, ptsampler)
get_args()
process_sampler(ptsampler, analysis, outdir, args)
main()
extract_chain_data(ptsampler)
create_convergence_plot(chain_data, result_fname)

Module Contents

bilby_pipe.process_bilby_mcmc.RESULT_SUBDIR = 'result'

class bilby_pipe.process_bilby_mcmc.Dummy

class bilby_pipe.process_bilby_mcmc.RobustUnpickler(*args, **kwds)

Bases: dill.Unpickler

python’s Unpickler extended to interpreter sessions and more types

find_class(module, name)

Return an object from a specified module.

If necessary, the module will be imported. Subclasses may override this method (e.g. to restrict unpickling of arbitrary classes and functions).

This method is called whenever a class or a function object is needed. Both arguments passed are str objects.

bilby_pipe.process_bilby_mcmc.glob_and_filter_files(args, globpath)

bilby_pipe.process_bilby_mcmc.get_resume_file_paths(args, label)

bilby_pipe.process_bilby_mcmc.extract_label_from_filename(filename)

bilby_pipe.process_bilby_mcmc.check_unique_file(files, ftype)

bilby_pipe.process_bilby_mcmc.find_data_dump_file(args)

bilby_pipe.process_bilby_mcmc.find_config(args)

bilby_pipe.process_bilby_mcmc.get_output_fname(outdir_result, resume_files, naming_method='datetime', extension='json')

bilby_pipe.process_bilby_mcmc.update_convergence_inputs(args, ptsampler)

bilby_pipe.process_bilby_mcmc.get_args()

bilby_pipe.process_bilby_mcmc.process_sampler(ptsampler, analysis, outdir, args)

bilby_pipe.process_bilby_mcmc.main()

bilby_pipe.process_bilby_mcmc.extract_chain_data(ptsampler)

bilby_pipe.process_bilby_mcmc.create_convergence_plot(chain_data, result_fname)